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Pathway based data integration and visualization
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Example 1
Example 2
Example 3
Example 4
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Example Analysis 4: Integrated Pathway Analysis (takes longer time)
Input & Output
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Coloration
Gene Data:
gse16873.3.txt
Compound Data:
sim.cpd.gse16873.csv
×
Gene data
Control/Reference
Case/Sample
HN_1
DCIS_1
HN_2
DCIS_2
HN_3
DCIS_3
HN_1
DCIS_1
HN_2
DCIS_2
HN_3
DCIS_3
Compare:
Paired
×
Compound data
Control/Reference
Case/Sample
cont1
cont2
exp1
exp2
cont1
cont2
exp1
exp2
Compare:
Paired
Species:
aaf-Aureococcus anophagefferens-N
aag-Aedes aegypti-yellow fever mosquito
aalb-Aedes albopictus-Asian tiger mosquito
aalt-Alternaria alternata-N
aam-Apteryx mantelli mantelli-North Island brown kiwi
aang-Anguilla anguilla-European eel
aara-Anopheles arabiensis-N
abe-Trichophyton benhamiae-N
abp-Agaricus bisporus var. burnettii JB137-S8-N
abv-Agaricus bisporus var. bisporus H97-N
acan-Acanthamoeba castellanii-N
acep-Atta cephalotes-leaf cutting ant
acer-Apis cerana-Asiatic honeybee
achc-Aquila chrysaetos chrysaetos-golden eagle
ache-Aspergillus chevalieri-N
acoz-Anopheles coluzzii-N
acs-Anolis carolinensis-green anole
act-Aspergillus clavatus-N
acun-Athene cunicularia-burrowing owl
acyg-Anser cygnoides domesticus-swan goose
adf-Acropora digitifera-stony coral
adl-Auricularia subglabra-N
adu-Arachis duranensis-N
aec-Acromyrmex echinatior-Panamanian leafcutter ant
afm-Aspergillus fumigatus-N
aful-Aythya fuligula-tufted duck
afv-Aspergillus flavus-N
aga-Anopheles gambiae-malaria mosquito
agb-Anoplophora glabripennis-Asian longhorned beetle
agif-Aphidius gifuensis-N
ago-Ashbya gossypii-Eremothecium gossypii
ags-Aphis gossypii-cotton aphid
ahf-Arachis hypogaea-peanut
aip-Arachis ipaensis-N
aje-Histoplasma mississippiense-N
ajm-Artibeus jamaicensis-Jamaican fruit-eating bat
aju-Acinonyx jubatus-cheetah
alab-Apis laboriosa-Himalayan honeybee
alat-Acanthopagrus latus-yellowfin seabream
alim-Austrofundulus limnaeus-annual killifish
aluc-Aspergillus luchuensis-N
aly-Arabidopsis lyrata-lyrate rockcress
ame-Apis mellifera-honey bee
amex-Astyanax mexicanus-Mexican tetra
amil-Acropora millepora-N
amj-Alligator mississippiensis-American alligator
aml-Ailuropoda melanoleuca-giant panda
ang-Aspergillus niger-black aspergilli
ani-Aspergillus nidulans-N
aoce-Amphiprion ocellaris-clown anemonefish
aof-Asparagus officinalis-garden asparagus
aor-Aspergillus oryzae-N
api-Acyrthosiphon pisum-pea aphid
apla-Anas platyrhynchos-mallard
aplc-Acanthaster planci-crown-of-thorns starfish
apln-Agrilus planipennis-emerald ash borer
aprc-Abrus precatorius-Indian licorice
apro-Auxenochlorella protothecoides-N
apuu-Aspergillus puulaauensis-N
aqu-Amphimedon queenslandica-sponge
arow-Apteryx rowi-Okarito brown kiwi
arut-Acipenser ruthenus-sterlet
asn-Alligator sinensis-Chinese alligator
aste-Anopheles stephensi-Asian malaria mosquito
atd-Aethina tumida-small hive beetle
aten-Actinia tenebrosa-Australian red waratah sea anemone
ath-Arabidopsis thaliana-thale cress
atr-Amborella trichopoda-N
ats-Aegilops tauschii-wheat D
bacu-Balaenoptera acutorostrata scammoni-minke whale
bany-Bicyclus anynana-squinting bush brown
bbel-Branchiostoma belcheri-Belcher's lancelet
bbif-Bombus bifarius-two-form bumblebee
bbig-Babesia bigemina-N
bbo-Babesia bovis-N
bbrx-Brettanomyces bruxellensis-N
bbub-Bubalus bubalis-water buffalo
bbuf-Bufo bufo-common toad
bcom-Baudoinia panamericana-N
bdi-Brachypodium distachyon-stiff brome
beq-Theileria equi-N
bfo-Branchiostoma floridae-Florida lancelet
bfu-Botrytis cinerea-Gray mold
bgar-Bufo gargarizans-Asiatic toad
bgh-Blastomyces gilchristii-N
bgt-Biomphalaria glabrata-bloodfluke planorb
bhj-Benincasa hispida-wax gourd
bim-Bombus impatiens-common eastern bumble bee
biu-Bos indicus-zebu cattle
bman-Bombyx mandarina-wild silkworm
bmic-Babesia microti-N
bmor-Bombyx mori-domestic silkworm
bmy-Brugia malayi-filaria
bna-Brassica napus-rape
bnn-Brettanomyces nanus-N
bod-Bactrocera oleae-olive fruit fly
boe-Brassica oleracea-wild cabbage
bom-Bos mutus-wild yak
bor-Bipolaris oryzae-N
bpec-Boleophthalmus pectinirostris-great blue-spotted mudskipper
bpg-Bathycoccus prasinos-N
bpyo-Bombus pyrosoma-N
brp-Brassica rapa-field mustard
bsc-Bipolaris sorokiniana-N
bspl-Betta splendens-Siamese fighting fish
bta-Bos taurus-cow
btab-Bemisia tabaci-sweet potato whitefly
bter-Bombus terrestris-buff-tailed bumblebee
bvan-Bombus vancouverensis nearcticus-N
bvg-Beta vulgaris-sugar beet
bvk-Bombus vosnesenskii-yellow-faced bumblebee
bze-Bipolaris zeicola-N
cabi-Chelonoidis abingdonii-Abingdon island giant tortoise
cal-Candida albicans-N
cam-Cicer arietinum-chickpea
cann-Capsicum annuum-peppers
caty-Cercocebus atys-sooty mangabey
caua-Carassius auratus-goldfish
caur-Candida auris-N
cbai-Camelus bactrianus-Bactrian camel
cbr-Caenorhabditis briggsae-nematode
cbra-Citrobacter braakii-N
ccad-Cervus canadensis-wapiti
ccae-Cyanistes caeruleus-blue tit
ccaj-Cajanus cajan-pigeon pea
ccal-Ceratina calcarata-carpenter bee
ccan-Castor canadensis-American beaver
ccar-Cyprinus carpio-common carp
ccat-Ceratitis capitata-Mediterranean fruit fly
ccav-Cynara cardunculus var. scolymus-artichoke
cci-Coprinopsis cinerea-N
ccin-Cephus cinctus-wheat stem sawfly
ccon-Cronobacter condimenti-N
ccp-Chondrus crispus-carragheen
ccw-Corvus cornix-hooded crow
cdk-Camelus dromedarius-Arabian camel
cdm-Cronobacter dublinensis-N
cdu-Candida dubliniensis-N
cel-Caenorhabditis elegans-nematode
cfa-Canis lupus familiaris-dog
cfd-Citrobacter freundii-N
cfj-Colletotrichum fioriniae-N
cfo-Camponotus floridanus-Florida carpenter ant
cfq-Citrobacter freundii complex sp. CFNIH3-N
cfr-Camelus ferus-Wild Bactrian camel
cge-Cricetulus griseus-Chinese hamster
cgi-Cryptococcus gattii-N
cgig-Colletes gigas-N
cglo-Cotesia glomerata-N
cgob-Cottoperca gobio-N
cgr-Candida glabrata-N
chig-Colletotrichum higginsianum-N
cho-Cryptosporidium hominis-N
chx-Capra hircus-goat
cic-Citrus clementina-mandarin orange
cim-Coccidioides immitis-N
cin-Ciona intestinalis-yellow sea squirt
cit-Citrus sinensis-Valencia orange
cjc-Callithrix jacchus-white-tufted-ear marmoset
cjo-Coturnix japonica-Japanese quail
cko-Citrobacter koseri-N
clec-Cimex lectularius-bed bug
clu-Clavispora lusitaniae ATCC 42720-N
clus-Clavispora lusitaniae CBS 6936-N
clv-Columba livia-rock pigeon
cmax-Cucurbita maxima-winter squash
cme-Cyanidioschyzon merolae-N
cmj-Cronobacter malonaticus LMG 23826-N
cmk-Callorhinchus milii-elephant shark
cmo-Cucumis melo-muskmelon
cmos-Cucurbita moschata-crookneck pumpkin
cmt-Cordyceps militaris-N
cmw-Cronobacter muytjensii-N
cmy-Chelonia mydas-green sea turtle
cnb-Cryptococcus neoformans var. neoformans B-3501A-N
cne-Cryptococcus neoformans var. neoformans JEC21-N
cng-Cryptococcus neoformans var. grubii H99-N
cns-Contarinia nasturtii-swede midge
cot-Candida orthopsilosis-N
cpap-Carica papaya-papaya
cpep-Cucurbita pepo subsp. pepo-vegetable marrow
cpic-Chrysemys picta-western painted turtle
cpii-Culex pipiens pallens-Northern house mosquito
cpoc-Cavia porcellus-domestic guinea pig
cpoo-Crocodylus porosus-Australian saltwater crocodile
cpot-Citrobacter portucalensis-N
cput-Coniophora puteana-N
cpv-Cryptosporidium parvum-N
cpw-Coccidioides posadasii-N
cqi-Chenopodium quinoa-quinoa
cqu-Culex quinquefasciatus-southern house mosquito
crb-Capsella rubella-pink shepherd's-purse
cre-Chlamydomonas reinhardtii-N
crg-Crassostrea gigas-Pacific oyster
cro-Citrobacter rodentium-N
csab-Chlorocebus sabaeus-green monkey
csat-Camelina sativa-false flax
cscu-Centruroides sculpturatus-bark scorpion
csec-Cryptotermes secundus-drywood termite
csem-Cynoglossus semilaevis-tongue sole
cset-Coccinella septempunctata-seven-spotted ladybird
csi-Cronobacter malonaticus CMCC45402-N
csin-Camellia sinensis-tea plant
csj-Cronobacter sakazakii ATCC 29544-N
csk-Cronobacter sakazakii ES15-N
csl-Coccomyxa subellipsoidea-N
csol-Ceratosolen solmsi marchali-fig wasp
csv-Cucumis sativus-cucumber
csyr-Carlito syrichta-Philippine tarsier
csz-Cronobacter sakazakii Sp291-N
cten-Yamadazyma tenuis-N
cthr-Thermochaetoides thermophila-N
ctp-Candida tropicalis-N
ctu-Cronobacter turicensis-N
ctul-Cyprinodon tularosa-White Sands pupfish
cud-Cheilinus undulatus-humphead wrasse
cui-Cronobacter universalis-N
cvg-Cyprinodon variegatus-sheepshead minnow
cvr-Chlorella variabilis-N
cwe-Citrobacter werkmanii-N
cyo-Citrobacter youngae-N
dam-Diachasma alloeum-N
dan-Drosophila ananassae-N
daz-Drosophila arizonae-N
dci-Diaphorina citri-Asian citrus psyllid
dcr-Daucus carota-carrot
dct-Dendrobium catenatum-N
ddi-Dictyostelium discoideum-cellular slime mold
der-Drosophila erecta-N
dfa-Cavenderia fasciculata-cellular slime mold
dfr-Dermatophagoides farinae-American house dust mite
dgr-Drosophila grimshawi-N
dgt-Dendronephthya gigantea-soft corals
dha-Debaryomyces hansenii-N
dhe-Drosophila hydei-N
dle-Delphinapterus leucas-beluga whale
dme-Drosophila melanogaster-fruit fly
dmk-Daphnia magna-water flea
dmn-Drosophila miranda-N
dmo-Drosophila mojavensis-N
dne-Dromaius novaehollandiae-emu
dnm-Dasypus novemcinctus-nine-banded armadillo
dnv-Drosophila navojoa-N
dnx-Diuraphis noxia-Russian wheat aphid
dord-Dipodomys ordii-Ord's kangaroo rat
dosa-Oryza sativa japonica-Japanese rice
dpa-Dendroctonus ponderosae-mountain pine beetle
dpe-Drosophila persimilis-N
dpl-Danaus plexippus-monarch butterfly
dpo-Drosophila pseudoobscura pseudoobscura-N
dpp-Dictyostelium purpureum-cellular slime mold
dpte-Dermatophagoides pteronyssinus-European house dust mite
dpx-Daphnia pulex-common water flea
dqu-Dinoponera quadriceps-N
dre-Danio rerio-zebrafish
dro-Desmodus rotundus-common vampire bat
dse-Drosophila sechellia-N
dsi-Drosophila simulans-N
dsp-Dipodomys spectabilis-banner-tailed kangaroo rat
dsq-Dichomitus squalens-N
dsr-Drosophila serrata-N
dsv-Dermacentor silvarum-N
dvi-Drosophila virilis-N
dwi-Drosophila willistoni-N
dya-Drosophila yakuba-N
dzi-Durio zibethinus-durian
eab-Escherichia coli ABU 83972-N
eae-Klebsiella aerogenes KCTC 2190-N
eaf-Eurytemora affinis-N
eai-Equus asinus-ass
eal-Escherichia albertii-N
ear-Klebsiella aerogenes EA1509E-N
eas-Enterobacter soli-N
eau-Enterobacter asburiae L1-N
ebd-Escherichia coli BL21-Gold(DE3)pLysS AG-N
ebe-Escherichia coli BL21(DE3)-N
ebg-Enterobacter bugandensis-N
ebl-Escherichia coli BL21(DE3)-N
ebr-Escherichia coli B REL606-N
ebw-Escherichia coli K-12 BW2952-N
ecad-Erigeron canadensis-horseweed
ecan-Enterobacter cancerogenus-N
ecb-Equus caballus-horse
ecc-Escherichia coli O6:K2:H1 CFT073 (UPEC)-N
ecd-Escherichia coli K-12 DH10B-N
ece-Escherichia coli O157:H7 EDL933 (EHEC)-N
ecf-Escherichia coli O157:H7 EC4115 (EHEC)-N
ecg-Escherichia coli O127:H6 E2348/69 (EPEC)-N
echg-Enterobacter chengduensis-N
eci-Escherichia coli O18:K1:H7 UTI89 (UPEC)-N
ecj-Escherichia coli K-12 W3110-N
eck-Escherichia coli 55989 (EAEC)-N
ecl-Escherichia coli ATCC 8739-N
ecla-Enterobacter hormaechei subsp. hoffmannii ECNIH3-N
eclc-Enterobacter hormaechei subsp. hoffmannii ECR091-N
ecle-Enterobacter cloacae ECNIH2-N
eclg-Enterobacter cloacae GGT036-N
ecli-Enterobacter cloacae ECNIH5-N
ecln-Enterobacter cloacae ECNIH4-N
eclo-Enterobacter hormaechei NCTC 9394-N
ecls-Enterobacter roggenkampii 35734-N
eclx-Enterobacter hormaechei subsp. xiangfangensis-N
ecly-Enterobacter hormaechei subsp. steigerwaltii-N
eclz-Enterobacter hormaechei subsp. hormaechei-N
ecm-Escherichia coli SMS-3-5 (environmental)-N
eco-Escherichia coli K-12 MG1655-N
ecoa-Escherichia coli APEC O78 (APEC)-N
ecoh-Escherichia coli O145:H28 RM13516 (EHEC)-N
ecoi-Escherichia coli O18:K1 PMV-1 (ExPEC)-N
ecoj-Escherichia coli JJ1886-N
ecok-Escherichia coli K-12 MDS42-N
ecol-Escherichia coli LY180-N
ecoo-Escherichia coli O145:H28 RM13514 (EHEC)-N
ecos-Escherichia coli O25b:K100:H4-ST131 EC958 (UPEC)-N
ecp-Escherichia coli O6:K15:H31 536 (UPEC)-N
ecq-Escherichia coli O81 ED1a (commensal)-N
ecr-Escherichia coli O8 IAI1 (commensal)-N
ecra-Etheostoma cragini-Arkansas darter
ecs-Escherichia coli O157:H7 Sakai (EHEC)-N
ect-Escherichia coli O7:K1 IAI39 (ExPEC)-N
ecu-Encephalitozoon cuniculi-N
ecv-Escherichia coli APEC O1 (APEC)-N
ecw-Escherichia coli O139:H28 E24377A (ETEC)-N
ecx-Escherichia coli O9 HS (commensal)-N
ecy-Escherichia coli O152:H28 SE11 (commensal)-N
ecz-Escherichia coli O45:K1:H7 S88 (ExPEC)-N
edh-Escherichia coli DH1-N
edi-Entamoeba dispar-N
edj-Escherichia coli DH1-N
eec-Enterobacter ludwigii EcWSU1-N
eee-Electrophorus electricus-electric eel
efe-Escherichia fergusonii-N
egl-Echinococcus granulosus-hydatid tapeworm
egr-Eucalyptus grandis-rose gum
egt-Erythranthe guttata-spotted monkey flower
egu-Elaeis guineensis-African oil palm
egz-Egretta garzetta-little egret
ehe-Encephalitozoon hellem-N
ehi-Entamoeba histolytica-N
ehm-Enterobacter hormaechei CAV1176-N
ehu-Enterobacter huaxiensis-N
ehx-Emiliania huxleyi-N
eih-Escherichia coli O18:K1:H7 IHE3034 (ExPEC)-N
ein-Encephalitozoon intestinalis-N
eiv-Entamoeba invadens-N
eju-Eumetopias jubatus-Steller sea lion
ekb-Enterobacter kobei DSM 13645-N
ekf-Escherichia coli KO11FL-N
eko-Escherichia coli KO11FL-N
ela-Eutypa lata-N
elc-Escherichia coli clone D i14-N
eld-Escherichia coli clone D i2-N
elf-Escherichia coli LF82-N
elg-Enterobacter ludwigii EN-119-N
elh-Escherichia coli O78:H11:K80 H10407 (ETEC)-N
elk-Enhydra lutris kenyoni-northern sea otter
ell-Escherichia coli W-N
eln-Escherichia coli O83:H1 NRG 857C (AIEC)-N
elo-Escherichia coli O44:H18 042 (EAEC)-N
elp-Escherichia coli P12b-N
elr-Escherichia coli O55:H7 RM12579 (EPEC)-N
els-Esox lucius-northern pike
elu-Escherichia coli UM146-N
elw-Escherichia coli W-N
elx-Escherichia coli O157:H7 Xuzhou21 (EHEC)-N
ely-Epinephelus lanceolatus-giant grouper
ema-Escherichia marmotae-N
emor-Enterobacter mori-N
ena-Escherichia coli NA114 (UPEC)-N
enc-Enterobacter cloacae subsp. cloacae ATCC 13047-N
end-Enterobacter sp. ODB01-N
enf-Enterobacter sp. FY-07-N
enk-Enterobacter sp. AN-K1-N
enl-Enterobacter cloacae subsp. dissolvens SDM-N
eno-Enterobacter kobei ENHKU01-N
enr-Enterobacter sp. R4-368-N
ens-Enterobacter sp. DSM 30060-N
ent-Enterobacter sp. 638-N
enx-Enterobacter sp. E20-N
enz-Enterobacter sp. T2-N
eoc-Escherichia coli O7:K1 CE10-N
eoh-Escherichia coli O103:H2 12009 (EHEC)-N
eoi-Escherichia coli O111:H- 11128 (EHEC)-N
eoj-Escherichia coli O26:H11 11368 (EHEC)-N
eok-Escherichia coli O55:H7 CB9615 (EPEC)-N
epa-Exaiptasia diaphana-Aiptasia
epz-Equus przewalskii-Przewalski's horse
erc-Eremothecium cymbalariae-N
ern-Enterobacter roggenkampii DSM 16690-N
ero-Encephalitozoon romaleae-N
esa-Cronobacter sakazakii ATCC BAA-894-N
ese-Escherichia coli O150:H5 SE15 (commensal)-N
esh-Enterobacter sichuanensis-N
esl-Escherichia coli O104:H4 2011C-3493 (EAEC)-N
esm-Escherichia coli O104:H4 2009EL-2050 (EAEC)-N
eso-Escherichia coli O104:H4 2009EL-2071 (EAEC)-N
esz-Escherichia sp. E4742-N
etl-Empidonax traillii-willow flycatcher
etw-Escherichia coli O157:H7 TW14359 (EHEC)-N
eum-Escherichia coli O17:K52:H18 UMN026 (ExPEC)-N
eun-Escherichia coli UMNK88 (ETEC, porcine)-N
eus-Eutrema salsugineum-saltwater cress
exf-Enterobacter hormaechei subsp. xiangfangensis-N
fab-Ficedula albicollis-collared flycatcher
fas-Fopius arisanus-N
fca-Felis catus-domestic cat
fcd-Folsomia candida-N
fch-Falco cherrug-Saker falcon
fcy-Fragilariopsis cylindrus-N
fex-Formica exsecta-narrow-headed ant
ffu-Fulvia fulva-N
fgr-Fusarium graminearum-N
fme-Fomitiporia mediterranea-N
foc-Frankliniella occidentalis-western flower thrips
fox-Fusarium oxysporum-N
fpg-Falco peregrinus-peregrine falcon
fpu-Fusarium pseudograminearum-N
fve-Fragaria vesca-woodland strawberry
fvr-Fusarium verticillioides-N
gab-Gossypium arboreum-tree cotton
gae-Gigantopelta aegis-peltospirid snail
gaf-Gambusia affinis-western mosquitofish
gas-Gracilinanus agilis-agile gracile opossum
gat-Gasterosteus aculeatus-three-spined stickleback
gfr-Geospiza fortis-medium ground-finch
gga-Gallus gallus-chicken
ggn-Gavialis gangeticus-Gharial
ggo-Gorilla gorilla gorilla-western lowland gorilla
ghi-Gossypium hirsutum-upland cotton
gja-Gekko japonicus-Schlegel's Japanese gecko
gla-Giardia lamblia-N
glz-Glarea lozoyensis-N
gmu-Girardinichthys multiradiatus-darkedged splitfin
gmx-Glycine max-soybean
gra-Gossypium raimondii-N
gsj-Glycine soja-wild soybean
gsl-Galdieria sulphuraria-N
gtr-Gloeophyllum trabeum-N
gtt-Guillardia theta-N
hai-Hipposideros armiger-great roundleaf bat
hame-Homarus americanus-American lobster
han-Helianthus annuus-common sunflower
haw-Helicoverpa armigera-cotton bollworm
hazt-Hyalella azteca-N
hbr-Hevea brasiliensis-rubber tree
hcq-Hippocampus comes-tiger tail seahorse
hgl-Heterocephalus glaber-naked mole-rat
hhal-Halyomorpha halys-brown marmorated stink bug
hhip-Hippoglossus hippoglossus-Atlantic halibut
hhv-Hyaena hyaena-striped hyena
hir-Heterobasidion irregulare-N
hmg-Hydra vulgaris-swiftwater hydra
hrf-Haliotis rufescens-red abalone
hrj-Haliotis rubra-blacklip abalone
hro-Helobdella robusta-N
hsa-Homo sapiens-human
hst-Harpegnathos saltator-Jerdon's jumping ant
ini-Ipomoea nil-Japanese morning glory
ipu-Ictalurus punctatus-channel catfish
isc-Ixodes scapularis-black-legged tick
itr-Ipomoea triloba-trilobed morning glory
jcu-Jatropha curcas-Barbados nut
jre-Juglans regia-English walnut
kaf-Kazachstania africana-N
kar-Klebsiella africana-N
kgr-Klebsiella grimontii-N
kla-Kluyveromyces lactis-N
kll-Klebsiella sp. LTGPAF-6F-N
klw-Klebsiella huaxiensis-N
kmi-Klebsiella michiganensis RC10-N
kmr-Kryptolebias marmoratus-mangrove rivulus
kmx-Kluyveromyces marxianus-N
kng-Kazachstania naganishii-N
koc-Klebsiella oxytoca CAV1374-N
koe-Klebsiella michiganensis E718-N
kok-Klebsiella oxytoca KONIH1-N
kom-Klebsiella michiganensis M1-N
kox-Klebsiella michiganensis KCTC 1686-N
koy-Klebsiella michiganensis HKOPL1-N
kpa-Klebsiella pneumoniae 30660/NJST258_1-N
kpb-Klebsiella pneumoniae blaNDM-1-N
kpc-Klebsiella pneumoniae subsp. pneumoniae KPNIH10-N
kpe-Klebsiella variicola 342-N
kpg-Klebsiella pneumoniae subsp. pneumoniae KPNIH32-N
kph-Klebsiella pneumoniae subsp. pneumoniae KPNIH24-N
kpi-Klebsiella pneumoniae CG43-N
kpj-Klebsiella pneumoniae JM45-N
kpk-Klebsiella variicola KP5-1-N
kpm-Klebsiella pneumoniae subsp. pneumoniae HS11286-N
kpn-Klebsiella pneumoniae subsp. pneumoniae MGH 78578 (serotype K52)-N
kpne-Klebsiella pneumoniae 32192-N
kpnk-Klebsiella pneumoniae Kp52.145-N
kpnu-Klebsiella pneumoniae 34618-N
kpo-Klebsiella pneumoniae KCTC 2242-N
kpp-Klebsiella pneumoniae subsp. pneumoniae 1084 (serotype K1)-N
kpq-Klebsiella pneumoniae subsp. pneumoniae KPR0928-N
kpr-Klebsiella pneumoniae subsp. rhinoscleromatis SB3432-N
kps-Klebsiella pneumoniae 30684/NJST258_2-N
kpt-Klebsiella pneumoniae subsp. pneumoniae ATCC 43816 KPPR1-N
kpu-Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044 (serotype K1)-N
kpv-Klebsiella pneumoniae subsp. pneumoniae KPNIH29-N
kpw-Klebsiella pneumoniae subsp. pneumoniae KPNIH30-N
kpx-Klebsiella pneumoniae PMK1-N
kpy-Klebsiella pneumoniae subsp. pneumoniae KPNIH31-N
kpz-Klebsiella pneumoniae subsp. pneumoniae KPNIH27-N
kqu-Klebsiella quasipneumoniae-N
kqv-Klebsiella quasivariicola-N
kva-Klebsiella variicola At-22-N
kvd-Klebsiella variicola DX120E-N
kvq-Klebsiella variicola DSM 15968-N
lak-Lingula anatina-N
lang-Lupinus angustifolius-narrow-leaved blue lupine
lav-Loxodonta africana-African savanna elephant
lbc-Laccaria bicolor-N
lbz-Leishmania braziliensis-N
lcf-Lates calcarifer-barramundi perch
lcm-Latimeria chalumnae-coelacanth
lco-Larimichthys crocea-large yellow croaker
lcq-Lucilia cuprina-Australian sheep blowfly
ldc-Leptinotarsa decemlineata-Colorado potato beetle
ldo-Leishmania donovani-N
lel-Lodderomyces elongisporus-N
lgi-Lottia gigantea-owl limpet
lhu-Linepithema humile-Argentine ant
lif-Leishmania infantum-N
lja-Lotus japonicus-N
llv-Lutra lutra-Eurasian river otter
lma-Leishmania major-N
lmi-Leishmania mexicana-N
lni-Enterobacter sp. SGAir0187-N
loa-Loa loa-eye worm
loc-Lepisosteus oculatus-spotted gar
lpan-Leishmania panamensis-N
lsm-Lepeophtheirus salmonis-salmon louse
lsr-Lonchura striata domestica-Bengalese finch
lsv-Lactuca sativa-garden lettuce
lth-Lachancea thermotolerans-N
lve-Lipotes vexillifer-Yangtze River dolphin
maj-Metarhizium robertsii-N
malb-Monopterus albus-swamp eel
mamb-Megalobrama amblycephala-Wuchang bream
maw-Metarhizium acridum-N
mbe-Drepanopeziza brunnea-N
mbr-Monosiga brevicollis-N
mcal-Mus caroli-Ryukyu mouse
mcc-Macaca mulatta-rhesus monkey
mcf-Macaca fascicularis-crab-eating macaque
mcha-Momordica charantia-bitter melon
mcoc-Mastomys coucha-southern multimammate mouse
mde-Musca domestica-house fly
mdl-Microplitis demolitor-N
mdm-Malus domestica-apple
mdo-Monodelphis domestica-gray short-tailed opossum
mesc-Manihot esculenta-cassava
mgen-Megalopta genalis-N
mgl-Malassezia globosa-N
mgp-Meleagris gallopavo-turkey
mgr-Pyricularia oryzae-N
minc-Mangifera indica-mango
ming-Macadamia integrifolia-macadamia nut
mis-Micromonas commoda-N
mjv-Manis javanica-Malayan pangolin
mlf-Myotis lucifugus-little brown bat
mlr-Melampsora larici-populina-N
mlx-Mirounga leonina-Southern elephant seal
mmer-Mercenaria mercenaria-northern quahog
mmf-Molossus molossus-Pallas's mastiff bat
mmu-Mus musculus-house mouse
mmur-Microcebus murinus-gray mouse lemur
mmyo-Myotis myotis-greater mouse-eared bat
mna-Miniopterus natalensis-Natal long-fingered bat
mng-Monoraphidium neglectum-N
mnt-Morus notabilis-N
more-Marasmius oreades-fairy-ring mushroom
mpah-Mus pahari-shrew mouse
mpha-Monomorium pharaonis-pharaoh ant
mpp-Micromonas pusilla-N
mpr-Moniliophthora perniciosa-N
mpuf-Mustela putorius furo-domestic ferret
mrr-Moniliophthora roreri-N
mrt-Malassezia restricta-N
mrv-Mauremys reevesii-Reeves's turtle
msam-Micropterus salmoides-largemouth bass
msex-Manduca sexta-tobacco hornworm
msym-Malassezia sympodialis-N
mtm-Thermothelomyces thermophilus-N
mtr-Medicago truncatula-barrel medic
mun-Meriones unguiculatus-Mongolian gerbil
mus-Musa acuminata-wild Malaysian banana
myb-Myotis brandtii-Brandt's bat
myd-Myotis davidii-David's myotis
myi-Mizuhopecten yessoensis-Yesso scallop
mze-Maylandia zebra-zebra mbuna
nai-Necator americanus-New World hookworm
nau-Nicotiana attenuata-coyote tobacco
ncar-Neosciurus carolinensis-gray squirrel
ncc-Notothenia coriiceps-black rockcod
nce-Nosema ceranae-N
ncol-Nymphaea colorata-blue-petal water lily
ncr-Neurospora crassa-N
ncs-Naumovozyma castellii-N
ndi-Naumovozyma dairenensis-N
nfi-Aspergillus fischeri-N
nfu-Nothobranchius furzeri-turquoise killifish
ngd-Nannochloropsis gaditana-N
ngi-Nannospalax galili-Upper Galilee mountains blind mole rat
ngr-Naegleria gruberi-N
nhe-Fusarium vanettenii-N
nle-Nomascus leucogenys-northern white-cheeked gibbon
nlu-Nilaparvata lugens-brown planthopper
nmea-Nomia melanderi-Alkali bee
nmel-Numida meleagris-helmeted guineafowl
nni-Nipponia nippon-crested ibis
nnu-Nelumbo nucifera-sacred lotus
npa-Neofusicoccum parvum-N
npd-Nothoprocta perdicaria-Chilean tinamou
npr-Nanorana parkeri-Xizang Plateau frog
nsy-Nicotiana sylvestris-wood tobacco
nta-Nicotiana tabacum-common tobacco
nte-Neurospora tetrasperma-N
nto-Nicotiana tomentosiformis-N
nve-Nematostella vectensis-starlet sea anemone
nvi-Nasonia vitripennis-jewel wasp
nvl-Nicrophorus vespilloides-burying beetle
nwh-Nematolebias whitei-Rio pearlfish
oaa-Ornithorhynchus anatinus-platypus
oas-Ovis aries-sheep
oau-Oreochromis aureus-blue tilapia
obb-Osmia bicornis bicornis-red mason bee
obi-Octopus bimaculoides-California two-spot octopus
obo-Ooceraea biroi-clonal raider ant
obr-Oryza brachyantha-malo sina
ocu-Oryctolagus cuniculus-rabbit
oda-Oryx dammah-scimitar-horned oryx
oeu-Olea europaea var. sylvestris-wild olive
ofu-Ostrinia furnacalis-Asian corn borer
oga-Otolemur garnettii-small-eared galago
ogo-Oncorhynchus gorbuscha-pink salmon
ola-Oryzias latipes-Japanese medaka
olu-Ostreococcus lucimarinus-N
oml-Oryzias melastigma-Indian medaka
omy-Oncorhynchus mykiss-rainbow trout
one-Oncorhynchus nerka-sockeye salmon
onl-Oreochromis niloticus-Nile tilapia
oor-Orcinus orca-killer whale
opa-Ogataea parapolymorpha-N
opi-Ochotona princeps-American pika
oro-Odobenus rosmarus divergens-Pacific walrus
osa-Oryza sativa japonica-Japanese rice
osn-Octopus sinensis-East Asian common octopus
ota-Ostreococcus tauri-N
otc-Onychostruthus taczanowskii-white-rumped snowfinch
otu-Onthophagus taurus-bull-headed dung beetle
otw-Oncorhynchus tshawytscha-Chinook salmon
ovi-Opisthorchis viverrini-Southeast Asian liver fluke
padl-Pygoscelis adeliae-Adelie penguin
pale-Pteropus alecto-black flying fox
palz-Populus alba-white poplar
pan-Podospora anserina-N
panu-Papio anubis-olive baboon
pavi-Prunus avium-sweet cherry
pbar-Pogonomyrmex barbatus-red harvester ant
pbe-Plasmodium berghei-N
pbg-Prionailurus bengalensis-leopard cat
pbi-Python bivittatus-Burmese python
pbl-Paracoccidioides lutzii Pb01-N
pbn-Paracoccidioides brasiliensis-N
pcad-Physeter catodon-sperm whale
pcan-Pomacea canaliculata-golden apple snail
pcb-Plasmodium chabaudi-N
pcf-Polistes canadensis-N
pchn-Penaeus chinensis-fleshy prawn
pcla-Procambarus clarkii-red swamp crayfish
pco-Phanerochaete carnosa-N
pcoc-Phasianus colchicus-Ring-necked pheasant
pcs-Penicillium rubens-N
pcw-Phascolarctos cinereus-koala
pcy-Plasmodium cynomolgi-N
pda-Phoenix dactylifera-date palm
pdam-Pocillopora damicornis-lace coral
pdic-Phyllostomus discolor-pale spear-nosed bat
pdp-Penicillium digitatum-N
pdul-Prunus dulcis-almond
peq-Phalaenopsis equestris-N
peu-Populus euphratica-Euphrates poplar
pfa-Plasmodium falciparum 3D7-N
pfd-Plasmodium falciparum Dd2-N
pfh-Plasmodium falciparum HB3-N
pfj-Pseudocercospora fijiensis-N
pflv-Perca flavescens-yellow perch
pfor-Poecilia formosa-Amazon molly
pfp-Pseudozyma flocculosa-N
pfuc-Polistes fuscatus-common paper wasp
pfy-Pestalotiopsis fici-N
pgab-Plasmodium gaboni-N
pgc-Pseudomyrmex gracilis-graceful twig ant
pgig-Pteropus giganteus-Indian flying fox
pgr-Puccinia graminis-N
pgu-Meyerozyma guilliermondii-N
pgut-Pantherophis guttatus-corn snake
phai-Panicum hallii-Hall's panicgrass
phas-Phyllostomus hastatus-greater spear-nosed bat
phi-Pseudopodoces humilis-Tibetan ground-tit
phu-Pediculus humanus corporis-human body louse
phyp-Pangasianodon hypophthalmus-striped catfish
pic-Scheffersomyces stipitis-N
pif-Phytophthora infestans-N
pja-Penaeus japonicus-kuruma prawn
pki-Paramormyrops kingsleyae-N
pkl-Pipistrellus kuhlii-Kuhl's pipistrelle
pkn-Plasmodium knowlesi-N
pkz-Pichia kudriavzevii-N
plai-Poecilia latipinna-sailfin molly
plep-Plectropomus leopardus-leopard coralgrouper
pleu-Peromyscus leucopus-white-footed mouse
plj-Purpureocillium lilacinum-N
pmac-Papilio machaon-common yellow swallowtail
pmaj-Parus major-Great Tit
pmax-Pecten maximus-king scallop
pmei-Poecilia mexicana-shortfin molly
pmoa-Passer montanus-Eurasian tree sparrow
pmua-Podarcis muralis-common wall lizard
pmum-Prunus mume-Japanese apricot
pmur-Protobothrops mucrosquamatus-Taiwan habu
pno-Parastagonospora nodorum-N
pon-Pongo abelii-Sumatran orangutan
pop-Populus trichocarpa-black cottonwood
pov-Paralichthys olivaceus-Japanese flounder
ppa-Komagataella phaffii-N
ppad-Panthera pardus-leopard
ppei-Pyricularia pennisetigena-N
pper-Prunus persica-peach
ppl-Postia placenta-N
ppoi-Pollicipes pollicipes-gooseneck barnacle
ppot-Papilio polytes-common Mormon
ppp-Physcomitrium patens-spreading earthmoss
pprm-Pimephales promelas-fathead minnow
pps-Pan paniscus-bonobo
ppug-Pungitius pungitius-ninespine stickleback
ppyr-Photinus pyralis-common eastern firefly
prap-Pieris rapae-cabbage white
prei-Plasmodium reichenowi-N
pret-Poecilia reticulata-guppy
pruf-Pyrgilauda ruficollis-rufous-necked snowfinch
psco-Mollisia scopiformis-N
psiu-Phocoena sinus-vaquita
psoj-Phytophthora sojae-N
psom-Papaver somniferum-opium poppy
pspa-Polyodon spathula-Mississippi paddlefish
psq-Punctularia strigosozonata-N
pss-Pelodiscus sinensis-Chinese soft-shelled turtle
pte-Pyrenophora teres-N
pteh-Piliocolobus tephrosceles-Ugandan red Colobus
ptep-Parasteatoda tepidariorum-common house spider
ptg-Panthera tigris altaica-Amur tiger
pti-Phaeodactylum tricornutum-N
ptm-Paramecium tetraurelia-N
ptr-Pan troglodytes-chimpanzee
ptru-Portunus trituberculatus-swimming crab
pvir-Panicum virgatum-switchgrass
pvm-Penaeus vannamei-Pacific white shrimp
pvp-Pteropus vampyrus-large flying fox
pvt-Pogona vitticeps-central bearded dragon
pvu-Phaseolus vulgaris-common bean
pvv-Plasmodium vinckei vinckei-N
pvx-Plasmodium vivax-N
pvy-Pistacia vera-pistachio
pxb-Pyrus x bretschneideri-Chinese white pear
pxu-Papilio xuthus-Asian swallowtail
pxy-Plutella xylostella-diamondback moth
pyo-Plasmodium yoelii-N
pyu-Puma yagouaroundi-jaguarundi
qlo-Quercus lobata-valley oak
qsu-Quercus suber-cork oak
rao-Raoultella sp. X13-N
ray-Rousettus aegyptiacus-Egyptian rousette
rbb-Rhinopithecus bieti-black snub-nosed monkey
rcn-Rosa chinensis-China rose
rcu-Ricinus communis-castor bean
ree-Raoultella electrica-N
rfq-Rhinolophus ferrumequinum-greater horseshoe bat
rmd-Rhopalosiphum maidis-corn leaf aphid
rmp-Rhipicephalus microplus-southern cattle tick
rno-Rattus norvegicus-rat
ron-Raoultella ornithinolytica S12-N
ror-Raoultella ornithinolytica B6-N
rpln-Raoultella planticola-N
rro-Rhinopithecus roxellana-golden snub-nosed monkey
rsan-Rhipicephalus sanguineus-brown dog tick
rsz-Raphanus sativus-radish
rtem-Rana temporaria-common frog
rtg-Raoultella terrigena-N
rtp-Rhincodon typus-whale shark
salp-Salvelinus sp. IW2-2015-Arctic char
salz-Salmonella sp. SSDFZ69-N
sanh-Sinocyclocheilus anshuiensis-N
sapo-Scedosporium apiospermum-N
sara-Sorex araneus-European shrew
sasa-Salmo salar-Atlantic salmon
sbc-Shigella boydii CDC 3083-94 (serotype 18)-N
sbg-Salmonella bongori NCTC 12419-N
sbi-Sorghum bicolor-sorghum
sbo-Shigella boydii Sb227 (serotype 4)-N
sbq-Saimiri boliviensis boliviensis-Bolivian squirrel monkey
sbv-Salmonella bongori serovar 48:z41:---N
sbz-Salmonella bongori N268-08-N
scac-Stomoxys calcitrans-stable fly
scan-Serinus canaria-common canary
sce-Saccharomyces cerevisiae-budding yeast
sclv-Styela clava-leathery sea squirt
scm-Schizophyllum commune-N
sdm-Stegodyphus dumicola-N
sdu-Seriola dumerili-greater amberjack
sdy-Shigella dysenteriae Sd197-N
sdz-Shigella dysenteriae 1617 (serotype 1)-N
sea-Salmonella enterica subsp. enterica serovar Agona SL483-N
seb-Salmonella enterica subsp. enterica serovar Typhimurium ST4/74-N
sec-Salmonella enterica subsp. enterica serovar Choleraesuis-N
sed-Salmonella enterica subsp. enterica serovar Dublin-N
see-Salmonella enterica subsp. enterica serovar Newport SL254-N
seeb-Salmonella enterica subsp. enterica serovar Bareilly-N
seec-Salmonella enterica subsp. enterica serovar Cubana-N
seeh-Salmonella enterica subsp. enterica serovar Heidelberg 41578-N
seen-Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. 08-1736-N
seep-Salmonella enterica subsp. enterica serovar Pullorum-N
sef-Salmonella enterica subsp. enterica serovar Typhimurium 798-N
seg-Salmonella enterica subsp. enterica serovar Gallinarum 287/91-N
sega-Salmonella enterica subsp. enterica serovar Gallinarum/pullorum CDC1983-67-N
seh-Salmonella enterica subsp. enterica serovar Heidelberg SL476-N
sei-Salmonella enterica subsp. enterica serovar Paratyphi C-N
sej-Salmonella enterica subsp. enterica serovar Typhimurium UK-1-N
sek-Salmonella enterica subsp. enterica serovar Paratyphi A AKU12601-N
sel-Salmonella enterica subsp. enterica serovar Gallinarum/pullorum RKS5078-N
sem-Salmonella enterica subsp. enterica serovar Typhimurium T000240-N
sena-Salmonella enterica subsp. enterica serovar Enteritidis EC20090135-N
senb-Salmonella enterica subsp. enterica serovar Bovismorbificans-N
senc-Salmonella enterica subsp. enterica serovar Tennessee-N
send-Salmonella enterica subsp. enterica serovar Typhimurium DT104-N
sene-Salmonella enterica subsp. enterica serovar Thompson-N
senh-Salmonella enterica subsp. enterica serovar Heidelberg CFSAN002069-N
seni-Salmonella enterica subsp. enterica serovar Typhimurium 138736-N
senj-Salmonella enterica subsp. enterica serovar Javiana-N
senl-Salmonella enterica subsp. enterica serovar Enteritidis OLF-SE1-1019-1-N
senn-Salmonella enterica subsp. enterica serovar Newport USMARC-S3124.1-N
seno-Salmonella enterica subsp. enterica serovar Enteritidis EC20090193-N
senq-Salmonella enterica subsp. enterica serovar Enteritidis EC20090531-N
senr-Salmonella enterica subsp. enterica serovar Typhimurium DT2-N
sens-Salmonella enterica subsp. enterica serovar Agona 24249-N
sent-Salmonella enterica subsp. enterica serovar Typhi Ty21a-N
senv-Salmonella enterica subsp. enterica serovar Enteritidis EC20090332-N
seo-Salmonella enterica subsp. enterica serovar Typhimurium 14028S-N
ses-Salmonella enterica subsp. arizonae-N
set-Salmonella enterica subsp. enterica serovar Enteritidis P125109-N
setc-Salmonella enterica subsp. enterica serovar Typhimurium var. 5- CFSAN001921-N
setu-Salmonella enterica subsp. enterica serovar Typhimurium U288-N
seub-Saccharomyces eubayanus-N
sev-Salmonella enterica subsp. enterica serovar Typhimurium D23580-N
sew-Salmonella enterica subsp. enterica serovar Schwarzengrund-N
sex-Salmonella enterica subsp. enterica serovar Typhi P-stx-12-N
sey-Salmonella enterica subsp. enterica serovar Typhimurium SL1344-N
sfe-Shigella flexneri 2002017 (serotype Fxv)-N
sfl-Shigella flexneri 301 (serotype 2a)-N
sfm-Scleropages formosus-Asian bonytongue
sfn-Shigella flexneri 2003036-N
sfs-Shigella flexneri Shi06HN006 (serotype Yv)-N
sft-Shigella flexneri NCTC1 (serotype 2a)-N
sfv-Shigella flexneri 8401 (serotype 5b)-N
sfx-Shigella flexneri 2457T (serotype 2a)-N
sgh-Sinocyclocheilus grahami-golden-line barbel
shb-Salmonella enterica subsp. enterica serovar Heidelberg B182-N
shon-Sturnira hondurensis-N
shq-Shigella sp. PAMC 28760-N
shr-Sarcophilus harrisii-Tasmanian devil
shs-Stereum hirsutum-N
shx-Schistosoma haematobium-urinary blood fluke
sind-Sesamum indicum-sesame
sita-Setaria italica-foxtail millet
sko-Saccoglossus kowalevskii-acorn worm
sla-Serpula lacrymans-N
slal-Seriola lalandi dorsalis-Yellowtail amberjack
slb-Sugiyamaella lignohabitans-N
sliu-Spodoptera litura-tobacco cutworm
sluc-Sander lucioperca-pikeperch
sly-Solanum lycopersicum-tomato
smeo-Silurus meridionalis-southern catfish
smin-Breviolum minutum-N
smm-Schistosoma mansoni-N
smo-Selaginella moellendorffii-N
smp-Sordaria macrospora-N
snh-Salvelinus namaycush-lake trout
soc-Solenopsis invicta-red fire ant
soe-Spinacia oleracea-spinach
sot-Solanum tuberosum-potato
soy-Sitophilus oryzae-rice weevil
spaa-Spathaspora passalidarum-N
spao-Saccharomyces paradoxus-N
spar-Saprolegnia parasitica-N
spen-Solanum pennellii-N
spis-Stylophora pistillata-Smooth Cauliflower Coral
spo-Schizosaccharomyces pombe-fission yeast
spq-Salmonella enterica subsp. enterica serovar Paratyphi B-N
spt-Salmonella enterica subsp. enterica serovar Paratyphi A ATCC9150-N
spu-Strongylocentrotus purpuratus-purple sea urchin
sre-Salpingoeca rosetta-N
srx-Sinocyclocheilus rhinocerous-N
ssc-Sus scrofa-pig
ssck-Sporothrix schenckii-N
ssen-Solea senegalensis-Senegalese sole
ssl-Sclerotinia sclerotiorum-N
ssn-Shigella sonnei Ss046-N
sspl-Salvia splendens-scarlet sage
stm-Salmonella enterica subsp. enterica serovar Typhimurium LT2-N
stow-Sphaerodactylus townsendi-Townsend's least gecko
stt-Salmonella enterica subsp. enterica serovar Typhi Ty2-N
sty-Salmonella enterica subsp. enterica serovar Typhi CT18-N
sund-Sceloporus undulatus-fence lizard
svs-Setaria viridis-green foxtail
tad-Trichoplax adhaerens-placozoan
taes-Triticum aestivum-bread wheat
tala-Tyto alba-Barn owl
tan-Theileria annulata-N
tasa-Trichosporon asahii var. asahii-N
tbg-Trypanosoma brucei gambiense-N
tbl-Tetrapisispora blattae-N
tbr-Trypanosoma brucei brucei-N
tca-Tribolium castaneum-red flour beetle
tcc-Theobroma cacao-cacao
tcr-Trypanosoma cruzi-N
tdc-Triticum dicoccoides-wild emmer wheat
tdl-Torulaspora delbrueckii-N
tet-Tetrahymena thermophila-N
tfd-Tachysurus fulvidraco-yellow catfish
tfn-Trachypithecus francoisi-Francois's langur
tgb-Torulaspora globosa-N
tge-Theropithecus gelada-gelada
tgo-Toxoplasma gondii-N
tgu-Taeniopygia guttata-zebra finch
thj-Tarenaya hassleriana-spider flower
tmf-Talaromyces marneffei-N
tml-Tuber melanosporum-N
tmn-Phaeoacremonium minimum-N
tms-Tremella mesenterica-N
tmu-Trichechus manatus latirostris-Florida manatee
tng-Tetraodon nigroviridis-spotted green pufferfish
tnl-Trichoplusia ni-cabbage looper
tod-Talpa occidentalis-Iberian mole
tot-Theileria orientalis-N
tpal-Thrips palmi-melon thrips
tpf-Tetrapisispora phaffii-N
tpre-Trichogramma pretiosum-N
tps-Thalassiosira pseudonana-N
tpv-Theileria parva-N
tre-Trichoderma reesei QM6a-N
trg-Talaromyces rugulosus-N
trr-Trichoderma reesei RUT C-30-N
tru-Takifugu rubripes-torafugu
tsp-Trichinella spiralis-N
tsr-Thamnophis sirtalis-common garter snake
tss-Telopea speciosissima-New South Wales waratah
tst-Trachemys scripta elegans-red-eared slider
ttt-Thermothielavioides terrestris-N
tua-Triticum urartu-red wild einkorn wheat
tup-Tupaia chinensis-Chinese tree shrew
tut-Tetranychus urticae-two-spotted spider mite
tva-Trichomonas vaginalis-N
tve-Trichophyton verrucosum-N
tvs-Trametes versicolor-N
twl-Tripterygium wilfordii-thunder duke vine
uah-Ursus arctos horribilis-North American brown bear
uar-Ursus americanus-American black bear
uma-Ustilago maydis-N
umr-Ursus maritimus-polar bear
ure-Uncinocarpus reesii-N
val-Verticillium alfalfae-N
var-Vigna angularis-adzuki bean
vcn-Volvox carteri f. nagariensis-N
vda-Verticillium dahliae-N
vde-Varroa destructor-honeybee mite
vem-Vollenhovia emeryi-N
vja-Varroa jacobsoni-N
vko-Varanus komodoensis-Komodo dragon
vlg-Vulpes lagopus-Arctic fox
vpc-Vicugna pacos-alpaca
vpo-Vanderwaltozyma polyspora-N
vps-Vespula pensylvanica-western yellowjacket
vra-Vigna radiata-mung bean
vri-Vitis riparia-riverbank grape
vun-Vigna unguiculata-cowpea
vvi-Vitis vinifera-wine grape
vvp-Vulpes vulpes-red fox
wic-Wallemia ichthyophaga-N
wse-Wallemia mellicola-N
xco-Xiphophorus couchianus-Monterrey platyfish
xen-Xenia sp. Carnegie-2017-soft corals
xgl-Xiphias gladius-swordfish
xhe-Xiphophorus hellerii-green swordtail
xla-Xenopus laevis-African clawed frog
xma-Xiphophorus maculatus-southern platyfish
xtr-Xenopus tropicalis-tropical clawed frog
yli-Yarrowia lipolytica-N
zab-Zonotrichia albicollis-white-throated sparrow
zca-Zalophus californianus-California sea lion
zce-Zerene cesonia-dogface butterfly
zju-Ziziphus jujuba-Chinese jujube
zma-Zea mays-maize
zmk-Zygotorulaspora mrakii-N
zne-Zootermopsis nevadensis-dampwood termite
zro-Zygosaccharomyces rouxii-N
ztr-Zymoseptoria tritici-N
zvi-Zootoca vivipara-common lizard
Gene ID Type:
ACCNUM
ENSEMBL
ENSEMBLPROT
ENSEMBLTRANS
ENTREZ
ENZYME
GENENAME
KEGG
PROSITE
REFSEQ
SYMBOL
UNIGENE
UNIPROT
Compound ID Type:
Agricola citation
Beilstein Registry Number
CAS Registry Number
ChEMBL COMPOUND
COMe accession
DrugBank accession
Gmelin Registry Number
HMDB accession
KEGG
KEGG COMPOUND accession
KEGG DRUG accession
KEGG GLYCAN accession
LIPID MAPS instance accession
MetaCyc accession
MolBase accession
Patent accession
PDB accession
PDBeChem accession
PubMed citation
Reaxys Registry Number
UM-BBD compID
Wikipedia accession
Pathway Selection:
Pathway ID:
00010-Glycolysis / Gluconeogenesis
00020-Citrate cycle (TCA cycle)
00030-Pentose phosphate pathway
00040-Pentose and glucuronate interconversions
00051-Fructose and mannose metabolism
00052-Galactose metabolism
00053-Ascorbate and aldarate metabolism
00061-Fatty acid biosynthesis
00062-Fatty acid elongation
00071-Fatty acid degradation
00073-Cutin, suberine and wax biosynthesis
00100-Steroid biosynthesis
00120-Primary bile acid biosynthesis
00121-Secondary bile acid biosynthesis
00130-Ubiquinone and other terpenoid-quinone biosynthesis
00140-Steroid hormone biosynthesis
00190-Oxidative phosphorylation
00195-Photosynthesis
00196-Photosynthesis - antenna proteins
00220-Arginine biosynthesis
00230-Purine metabolism
00232-Caffeine metabolism
00240-Pyrimidine metabolism
00250-Alanine, aspartate and glutamate metabolism
00253-Tetracycline biosynthesis
00254-Aflatoxin biosynthesis
00260-Glycine, serine and threonine metabolism
00261-Monobactam biosynthesis
00270-Cysteine and methionine metabolism
00280-Valine, leucine and isoleucine degradation
00281-Geraniol degradation
00290-Valine, leucine and isoleucine biosynthesis
00300-Lysine biosynthesis
00310-Lysine degradation
00311-Penicillin and cephalosporin biosynthesis
00330-Arginine and proline metabolism
00331-Clavulanic acid biosynthesis
00332-Carbapenem biosynthesis
00333-Prodigiosin biosynthesis
00340-Histidine metabolism
00350-Tyrosine metabolism
00360-Phenylalanine metabolism
00361-Chlorocyclohexane and chlorobenzene degradation
00362-Benzoate degradation
00363-Bisphenol degradation
00364-Fluorobenzoate degradation
00365-Furfural degradation
00380-Tryptophan metabolism
00400-Phenylalanine, tyrosine and tryptophan biosynthesis
00401-Novobiocin biosynthesis
00402-Benzoxazinoid biosynthesis
00403-Indole diterpene alkaloid biosynthesis
00404-Staurosporine biosynthesis
00405-Phenazine biosynthesis
00410-beta-Alanine metabolism
00430-Taurine and hypotaurine metabolism
00440-Phosphonate and phosphinate metabolism
00450-Selenocompound metabolism
00460-Cyanoamino acid metabolism
00470-D-Amino acid metabolism
00480-Glutathione metabolism
00500-Starch and sucrose metabolism
00510-N-Glycan biosynthesis
00511-Other glycan degradation
00512-Mucin type O-glycan biosynthesis
00513-Various types of N-glycan biosynthesis
00514-Other types of O-glycan biosynthesis
00515-Mannose type O-glycan biosynthesis
00520-Amino sugar and nucleotide sugar metabolism
00521-Streptomycin biosynthesis
00522-Biosynthesis of 12-, 14- and 16-membered macrolides
00523-Polyketide sugar unit biosynthesis
00524-Neomycin, kanamycin and gentamicin biosynthesis
00525-Acarbose and validamycin biosynthesis
00531-Glycosaminoglycan degradation
00532-Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
00533-Glycosaminoglycan biosynthesis - keratan sulfate
00534-Glycosaminoglycan biosynthesis - heparan sulfate / heparin
00540-Lipopolysaccharide biosynthesis
00541-O-Antigen nucleotide sugar biosynthesis
00542-O-Antigen repeat unit biosynthesis
00550-Peptidoglycan biosynthesis
00552-Teichoic acid biosynthesis
00561-Glycerolipid metabolism
00562-Inositol phosphate metabolism
00563-Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
00564-Glycerophospholipid metabolism
00565-Ether lipid metabolism
00571-Lipoarabinomannan (LAM) biosynthesis
00572-Arabinogalactan biosynthesis - Mycobacterium
00590-Arachidonic acid metabolism
00591-Linoleic acid metabolism
00592-alpha-Linolenic acid metabolism
00600-Sphingolipid metabolism
00601-Glycosphingolipid biosynthesis - lacto and neolacto series
00603-Glycosphingolipid biosynthesis - globo and isoglobo series
00604-Glycosphingolipid biosynthesis - ganglio series
00620-Pyruvate metabolism
00621-Dioxin degradation
00622-Xylene degradation
00623-Toluene degradation
00624-Polycyclic aromatic hydrocarbon degradation
00625-Chloroalkane and chloroalkene degradation
00626-Naphthalene degradation
00627-Aminobenzoate degradation
00630-Glyoxylate and dicarboxylate metabolism
00633-Nitrotoluene degradation
00640-Propanoate metabolism
00642-Ethylbenzene degradation
00643-Styrene degradation
00650-Butanoate metabolism
00660-C5-Branched dibasic acid metabolism
00670-One carbon pool by folate
00680-Methane metabolism
00710-Carbon fixation in photosynthetic organisms
00720-Carbon fixation pathways in prokaryotes
00730-Thiamine metabolism
00740-Riboflavin metabolism
00750-Vitamin B6 metabolism
00760-Nicotinate and nicotinamide metabolism
00770-Pantothenate and CoA biosynthesis
00780-Biotin metabolism
00785-Lipoic acid metabolism
00790-Folate biosynthesis
00791-Atrazine degradation
00830-Retinol metabolism
00860-Porphyrin metabolism
00900-Terpenoid backbone biosynthesis
00901-Indole alkaloid biosynthesis
00902-Monoterpenoid biosynthesis
00903-Limonene and pinene degradation
00904-Diterpenoid biosynthesis
00905-Brassinosteroid biosynthesis
00906-Carotenoid biosynthesis
00908-Zeatin biosynthesis
00909-Sesquiterpenoid and triterpenoid biosynthesis
00910-Nitrogen metabolism
00920-Sulfur metabolism
00930-Caprolactam degradation
00940-Phenylpropanoid biosynthesis
00941-Flavonoid biosynthesis
00942-Anthocyanin biosynthesis
00943-Isoflavonoid biosynthesis
00944-Flavone and flavonol biosynthesis
00945-Stilbenoid, diarylheptanoid and gingerol biosynthesis
00950-Isoquinoline alkaloid biosynthesis
00960-Tropane, piperidine and pyridine alkaloid biosynthesis
00965-Betalain biosynthesis
00966-Glucosinolate biosynthesis
00970-Aminoacyl-tRNA biosynthesis
00980-Metabolism of xenobiotics by cytochrome P450
00981-Insect hormone biosynthesis
00982-Drug metabolism - cytochrome P450
00983-Drug metabolism - other enzymes
00984-Steroid degradation
00996-Biosynthesis of various alkaloids
00997-Biosynthesis of various other secondary metabolites
00998-Biosynthesis of various antibiotics
00999-Biosynthesis of various plant secondary metabolites
01040-Biosynthesis of unsaturated fatty acids
01051-Biosynthesis of ansamycins
01052-Type I polyketide structures
01053-Biosynthesis of siderophore group nonribosomal peptides
01054-Nonribosomal peptide structures
01055-Biosynthesis of vancomycin group antibiotics
01056-Biosynthesis of type II polyketide backbone
01057-Biosynthesis of type II polyketide products
01059-Biosynthesis of enediyne antibiotics
01100-Metabolic pathways
01110-Biosynthesis of secondary metabolites
01120-Microbial metabolism in diverse environments
01200-Carbon metabolism
01210-2-Oxocarboxylic acid metabolism
01212-Fatty acid metabolism
01220-Degradation of aromatic compounds
01230-Biosynthesis of amino acids
01232-Nucleotide metabolism
01240-Biosynthesis of cofactors
01250-Biosynthesis of nucleotide sugars
01501-beta-Lactam resistance
01502-Vancomycin resistance
01503-Cationic antimicrobial peptide (CAMP) resistance
01521-EGFR tyrosine kinase inhibitor resistance
01522-Endocrine resistance
01523-Antifolate resistance
01524-Platinum drug resistance
02010-ABC transporters
02020-Two-component system
02024-Quorum sensing
02025-Biofilm formation - Pseudomonas aeruginosa
02026-Biofilm formation - Escherichia coli
02030-Bacterial chemotaxis
02040-Flagellar assembly
02060-Phosphotransferase system (PTS)
03008-Ribosome biogenesis in eukaryotes
03010-Ribosome
03013-Nucleocytoplasmic transport
03015-mRNA surveillance pathway
03018-RNA degradation
03020-RNA polymerase
03022-Basal transcription factors
03030-DNA replication
03040-Spliceosome
03050-Proteasome
03060-Protein export
03070-Bacterial secretion system
03230-Viral genome structure
03240-Viral replication
03250-Viral life cycle - HIV-1
03320-PPAR signaling pathway
03410-Base excision repair
03420-Nucleotide excision repair
03430-Mismatch repair
03440-Homologous recombination
03450-Non-homologous end-joining
03460-Fanconi anemia pathway
04010-MAPK signaling pathway
04011-MAPK signaling pathway - yeast
04012-ErbB signaling pathway
04013-MAPK signaling pathway - fly
04014-Ras signaling pathway
04015-Rap1 signaling pathway
04016-MAPK signaling pathway - plant
04020-Calcium signaling pathway
04022-cGMP-PKG signaling pathway
04024-cAMP signaling pathway
04060-Cytokine-cytokine receptor interaction
04061-Viral protein interaction with cytokine and cytokine receptor
04062-Chemokine signaling pathway
04064-NF-kappa B signaling pathway
04066-HIF-1 signaling pathway
04068-FoxO signaling pathway
04070-Phosphatidylinositol signaling system
04071-Sphingolipid signaling pathway
04072-Phospholipase D signaling pathway
04075-Plant hormone signal transduction
04080-Neuroactive ligand-receptor interaction
04110-Cell cycle
04111-Cell cycle - yeast
04112-Cell cycle - Caulobacter
04113-Meiosis - yeast
04114-Oocyte meiosis
04115-p53 signaling pathway
04120-Ubiquitin mediated proteolysis
04122-Sulfur relay system
04130-SNARE interactions in vesicular transport
04136-Autophagy - other
04137-Mitophagy - animal
04138-Autophagy - yeast
04139-Mitophagy - yeast
04140-Autophagy - animal
04141-Protein processing in endoplasmic reticulum
04142-Lysosome
04144-Endocytosis
04145-Phagosome
04146-Peroxisome
04150-mTOR signaling pathway
04151-PI3K-Akt signaling pathway
04152-AMPK signaling pathway
04210-Apoptosis
04211-Longevity regulating pathway
04212-Longevity regulating pathway - worm
04213-Longevity regulating pathway - multiple species
04214-Apoptosis - fly
04215-Apoptosis - multiple species
04216-Ferroptosis
04217-Necroptosis
04218-Cellular senescence
04260-Cardiac muscle contraction
04261-Adrenergic signaling in cardiomyocytes
04270-Vascular smooth muscle contraction
04310-Wnt signaling pathway
04320-Dorso-ventral axis formation
04330-Notch signaling pathway
04340-Hedgehog signaling pathway
04341-Hedgehog signaling pathway - fly
04350-TGF-beta signaling pathway
04360-Axon guidance
04361-Axon regeneration
04370-VEGF signaling pathway
04371-Apelin signaling pathway
04380-Osteoclast differentiation
04390-Hippo signaling pathway
04391-Hippo signaling pathway - fly
04392-Hippo signaling pathway - multiple species
04510-Focal adhesion
04512-ECM-receptor interaction
04514-Cell adhesion molecules
04520-Adherens junction
04530-Tight junction
04540-Gap junction
04550-Signaling pathways regulating pluripotency of stem cells
04610-Complement and coagulation cascades
04611-Platelet activation
04612-Antigen processing and presentation
04613-Neutrophil extracellular trap formation
04614-Renin-angiotensin system
04620-Toll-like receptor signaling pathway
04621-NOD-like receptor signaling pathway
04622-RIG-I-like receptor signaling pathway
04623-Cytosolic DNA-sensing pathway
04624-Toll and Imd signaling pathway
04625-C-type lectin receptor signaling pathway
04626-Plant-pathogen interaction
04630-JAK-STAT signaling pathway
04640-Hematopoietic cell lineage
04650-Natural killer cell mediated cytotoxicity
04657-IL-17 signaling pathway
04658-Th1 and Th2 cell differentiation
04659-Th17 cell differentiation
04660-T cell receptor signaling pathway
04662-B cell receptor signaling pathway
04664-Fc epsilon RI signaling pathway
04666-Fc gamma R-mediated phagocytosis
04668-TNF signaling pathway
04670-Leukocyte transendothelial migration
04672-Intestinal immune network for IgA production
04710-Circadian rhythm
04711-Circadian rhythm - fly
04712-Circadian rhythm - plant
04713-Circadian entrainment
04714-Thermogenesis
04720-Long-term potentiation
04721-Synaptic vesicle cycle
04722-Neurotrophin signaling pathway
04723-Retrograde endocannabinoid signaling
04724-Glutamatergic synapse
04725-Cholinergic synapse
04726-Serotonergic synapse
04727-GABAergic synapse
04728-Dopaminergic synapse
04730-Long-term depression
04740-Olfactory transduction
04742-Taste transduction
04744-Phototransduction
04745-Phototransduction - fly
04750-Inflammatory mediator regulation of TRP channels
04810-Regulation of actin cytoskeleton
04910-Insulin signaling pathway
04911-Insulin secretion
04912-GnRH signaling pathway
04913-Ovarian steroidogenesis
04914-Progesterone-mediated oocyte maturation
04915-Estrogen signaling pathway
04916-Melanogenesis
04917-Prolactin signaling pathway
04918-Thyroid hormone synthesis
04919-Thyroid hormone signaling pathway
04920-Adipocytokine signaling pathway
04921-Oxytocin signaling pathway
04922-Glucagon signaling pathway
04923-Regulation of lipolysis in adipocytes
04924-Renin secretion
04925-Aldosterone synthesis and secretion
04926-Relaxin signaling pathway
04927-Cortisol synthesis and secretion
04928-Parathyroid hormone synthesis, secretion and action
04929-GnRH secretion
04930-Type II diabetes mellitus
04931-Insulin resistance
04932-Non-alcoholic fatty liver disease
04933-AGE-RAGE signaling pathway in diabetic complications
04934-Cushing syndrome
04935-Growth hormone synthesis, secretion and action
04936-Alcoholic liver disease
04940-Type I diabetes mellitus
04950-Maturity onset diabetes of the young
04960-Aldosterone-regulated sodium reabsorption
04961-Endocrine and other factor-regulated calcium reabsorption
04962-Vasopressin-regulated water reabsorption
04964-Proximal tubule bicarbonate reclamation
04966-Collecting duct acid secretion
04970-Salivary secretion
04971-Gastric acid secretion
04972-Pancreatic secretion
04973-Carbohydrate digestion and absorption
04974-Protein digestion and absorption
04975-Fat digestion and absorption
04976-Bile secretion
04977-Vitamin digestion and absorption
04978-Mineral absorption
04979-Cholesterol metabolism
05010-Alzheimer disease
05012-Parkinson disease
05014-Amyotrophic lateral sclerosis
05016-Huntington disease
05017-Spinocerebellar ataxia
05020-Prion disease
05022-Pathways of neurodegeneration - multiple diseases
05030-Cocaine addiction
05031-Amphetamine addiction
05032-Morphine addiction
05033-Nicotine addiction
05034-Alcoholism
05100-Bacterial invasion of epithelial cells
05110-Vibrio cholerae infection
05111-Biofilm formation - Vibrio cholerae
05120-Epithelial cell signaling in Helicobacter pylori infection
05130-Pathogenic Escherichia coli infection
05131-Shigellosis
05132-Salmonella infection
05133-Pertussis
05134-Legionellosis
05135-Yersinia infection
05140-Leishmaniasis
05142-Chagas disease
05143-African trypanosomiasis
05144-Malaria
05145-Toxoplasmosis
05146-Amoebiasis
05150-Staphylococcus aureus infection
05152-Tuberculosis
05160-Hepatitis C
05161-Hepatitis B
05162-Measles
05163-Human cytomegalovirus infection
05164-Influenza A
05165-Human papillomavirus infection
05166-Human T-cell leukemia virus 1 infection
05167-Kaposi sarcoma-associated herpesvirus infection
05168-Herpes simplex virus 1 infection
05169-Epstein-Barr virus infection
05170-Human immunodeficiency virus 1 infection
05171-Coronavirus disease - COVID-19
05200-Pathways in cancer
05202-Transcriptional misregulation in cancer
05203-Viral carcinogenesis
05204-Chemical carcinogenesis - DNA adducts
05205-Proteoglycans in cancer
05206-MicroRNAs in cancer
05207-Chemical carcinogenesis - receptor activation
05208-Chemical carcinogenesis - reactive oxygen species
05210-Colorectal cancer
05211-Renal cell carcinoma
05212-Pancreatic cancer
05213-Endometrial cancer
05214-Glioma
05215-Prostate cancer
05216-Thyroid cancer
05217-Basal cell carcinoma
05218-Melanoma
05219-Bladder cancer
05220-Chronic myeloid leukemia
05221-Acute myeloid leukemia
05222-Small cell lung cancer
05223-Non-small cell lung cancer
05224-Breast cancer
05225-Hepatocellular carcinoma
05226-Gastric cancer
05230-Central carbon metabolism in cancer
05231-Choline metabolism in cancer
05235-PD-L1 expression and PD-1 checkpoint pathway in cancer
05310-Asthma
05320-Autoimmune thyroid disease
05321-Inflammatory bowel disease
05322-Systemic lupus erythematosus
05323-Rheumatoid arthritis
05330-Allograft rejection
05332-Graft-versus-host disease
05340-Primary immunodeficiency
05410-Hypertrophic cardiomyopathy
05412-Arrhythmogenic right ventricular cardiomyopathy
05414-Dilated cardiomyopathy
05415-Diabetic cardiomyopathy
05416-Viral myocarditis
05417-Lipid and atherosclerosis
05418-Fluid shear stress and atherosclerosis
Note: Remove items by deleting
00640-Propanoate metabolism,
00010-Glycolysis / Gluconeogenesis
00020-Citrate cycle (TCA cycle)
00030-Pentose phosphate pathway
00040-Pentose and glucuronate interconversions
00051-Fructose and mannose metabolism
00052-Galactose metabolism
00053-Ascorbate and aldarate metabolism
00061-Fatty acid biosynthesis
00062-Fatty acid elongation
00071-Fatty acid degradation
00073-Cutin, suberine and wax biosynthesis
00100-Steroid biosynthesis
00120-Primary bile acid biosynthesis
00121-Secondary bile acid biosynthesis
00130-Ubiquinone and other terpenoid-quinone biosynthesis
00140-Steroid hormone biosynthesis
00190-Oxidative phosphorylation
00195-Photosynthesis
00196-Photosynthesis - antenna proteins
00220-Arginine biosynthesis
00230-Purine metabolism
00232-Caffeine metabolism
00240-Pyrimidine metabolism
00250-Alanine, aspartate and glutamate metabolism
00253-Tetracycline biosynthesis
00254-Aflatoxin biosynthesis
00260-Glycine, serine and threonine metabolism
00261-Monobactam biosynthesis
00270-Cysteine and methionine metabolism
00280-Valine, leucine and isoleucine degradation
00281-Geraniol degradation
00290-Valine, leucine and isoleucine biosynthesis
00300-Lysine biosynthesis
00310-Lysine degradation
00311-Penicillin and cephalosporin biosynthesis
00330-Arginine and proline metabolism
00331-Clavulanic acid biosynthesis
00332-Carbapenem biosynthesis
00333-Prodigiosin biosynthesis
00340-Histidine metabolism
00350-Tyrosine metabolism
00360-Phenylalanine metabolism
00361-Chlorocyclohexane and chlorobenzene degradation
00362-Benzoate degradation
00363-Bisphenol degradation
00364-Fluorobenzoate degradation
00365-Furfural degradation
00380-Tryptophan metabolism
00400-Phenylalanine, tyrosine and tryptophan biosynthesis
00401-Novobiocin biosynthesis
00402-Benzoxazinoid biosynthesis
00403-Indole diterpene alkaloid biosynthesis
00404-Staurosporine biosynthesis
00405-Phenazine biosynthesis
00410-beta-Alanine metabolism
00430-Taurine and hypotaurine metabolism
00440-Phosphonate and phosphinate metabolism
00450-Selenocompound metabolism
00460-Cyanoamino acid metabolism
00470-D-Amino acid metabolism
00480-Glutathione metabolism
00500-Starch and sucrose metabolism
00510-N-Glycan biosynthesis
00511-Other glycan degradation
00512-Mucin type O-glycan biosynthesis
00513-Various types of N-glycan biosynthesis
00514-Other types of O-glycan biosynthesis
00515-Mannose type O-glycan biosynthesis
00520-Amino sugar and nucleotide sugar metabolism
00521-Streptomycin biosynthesis
00522-Biosynthesis of 12-, 14- and 16-membered macrolides
00523-Polyketide sugar unit biosynthesis
00524-Neomycin, kanamycin and gentamicin biosynthesis
00525-Acarbose and validamycin biosynthesis
00531-Glycosaminoglycan degradation
00532-Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
00533-Glycosaminoglycan biosynthesis - keratan sulfate
00534-Glycosaminoglycan biosynthesis - heparan sulfate / heparin
00540-Lipopolysaccharide biosynthesis
00541-O-Antigen nucleotide sugar biosynthesis
00542-O-Antigen repeat unit biosynthesis
00550-Peptidoglycan biosynthesis
00552-Teichoic acid biosynthesis
00561-Glycerolipid metabolism
00562-Inositol phosphate metabolism
00563-Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
00564-Glycerophospholipid metabolism
00565-Ether lipid metabolism
00571-Lipoarabinomannan (LAM) biosynthesis
00572-Arabinogalactan biosynthesis - Mycobacterium
00590-Arachidonic acid metabolism
00591-Linoleic acid metabolism
00592-alpha-Linolenic acid metabolism
00600-Sphingolipid metabolism
00601-Glycosphingolipid biosynthesis - lacto and neolacto series
00603-Glycosphingolipid biosynthesis - globo and isoglobo series
00604-Glycosphingolipid biosynthesis - ganglio series
00620-Pyruvate metabolism
00621-Dioxin degradation
00622-Xylene degradation
00623-Toluene degradation
00624-Polycyclic aromatic hydrocarbon degradation
00625-Chloroalkane and chloroalkene degradation
00626-Naphthalene degradation
00627-Aminobenzoate degradation
00630-Glyoxylate and dicarboxylate metabolism
00633-Nitrotoluene degradation
00640-Propanoate metabolism
00642-Ethylbenzene degradation
00643-Styrene degradation
00650-Butanoate metabolism
00660-C5-Branched dibasic acid metabolism
00670-One carbon pool by folate
00680-Methane metabolism
00710-Carbon fixation in photosynthetic organisms
00720-Carbon fixation pathways in prokaryotes
00730-Thiamine metabolism
00740-Riboflavin metabolism
00750-Vitamin B6 metabolism
00760-Nicotinate and nicotinamide metabolism
00770-Pantothenate and CoA biosynthesis
00780-Biotin metabolism
00785-Lipoic acid metabolism
00790-Folate biosynthesis
00791-Atrazine degradation
00830-Retinol metabolism
00860-Porphyrin metabolism
00900-Terpenoid backbone biosynthesis
00901-Indole alkaloid biosynthesis
00902-Monoterpenoid biosynthesis
00903-Limonene and pinene degradation
00904-Diterpenoid biosynthesis
00905-Brassinosteroid biosynthesis
00906-Carotenoid biosynthesis
00908-Zeatin biosynthesis
00909-Sesquiterpenoid and triterpenoid biosynthesis
00910-Nitrogen metabolism
00920-Sulfur metabolism
00930-Caprolactam degradation
00940-Phenylpropanoid biosynthesis
00941-Flavonoid biosynthesis
00942-Anthocyanin biosynthesis
00943-Isoflavonoid biosynthesis
00944-Flavone and flavonol biosynthesis
00945-Stilbenoid, diarylheptanoid and gingerol biosynthesis
00950-Isoquinoline alkaloid biosynthesis
00960-Tropane, piperidine and pyridine alkaloid biosynthesis
00965-Betalain biosynthesis
00966-Glucosinolate biosynthesis
00970-Aminoacyl-tRNA biosynthesis
00980-Metabolism of xenobiotics by cytochrome P450
00981-Insect hormone biosynthesis
00982-Drug metabolism - cytochrome P450
00983-Drug metabolism - other enzymes
00984-Steroid degradation
00996-Biosynthesis of various alkaloids
00997-Biosynthesis of various other secondary metabolites
00998-Biosynthesis of various antibiotics
00999-Biosynthesis of various plant secondary metabolites
01040-Biosynthesis of unsaturated fatty acids
01051-Biosynthesis of ansamycins
01052-Type I polyketide structures
01053-Biosynthesis of siderophore group nonribosomal peptides
01054-Nonribosomal peptide structures
01055-Biosynthesis of vancomycin group antibiotics
01056-Biosynthesis of type II polyketide backbone
01057-Biosynthesis of type II polyketide products
01059-Biosynthesis of enediyne antibiotics
01100-Metabolic pathways
01110-Biosynthesis of secondary metabolites
01120-Microbial metabolism in diverse environments
01200-Carbon metabolism
01210-2-Oxocarboxylic acid metabolism
01212-Fatty acid metabolism
01220-Degradation of aromatic compounds
01230-Biosynthesis of amino acids
01232-Nucleotide metabolism
01240-Biosynthesis of cofactors
01250-Biosynthesis of nucleotide sugars
01501-beta-Lactam resistance
01502-Vancomycin resistance
01503-Cationic antimicrobial peptide (CAMP) resistance
01521-EGFR tyrosine kinase inhibitor resistance
01522-Endocrine resistance
01523-Antifolate resistance
01524-Platinum drug resistance
02010-ABC transporters
02020-Two-component system
02024-Quorum sensing
02025-Biofilm formation - Pseudomonas aeruginosa
02026-Biofilm formation - Escherichia coli
02030-Bacterial chemotaxis
02040-Flagellar assembly
02060-Phosphotransferase system (PTS)
03008-Ribosome biogenesis in eukaryotes
03010-Ribosome
03013-Nucleocytoplasmic transport
03015-mRNA surveillance pathway
03018-RNA degradation
03020-RNA polymerase
03022-Basal transcription factors
03030-DNA replication
03040-Spliceosome
03050-Proteasome
03060-Protein export
03070-Bacterial secretion system
03230-Viral genome structure
03240-Viral replication
03250-Viral life cycle - HIV-1
03320-PPAR signaling pathway
03410-Base excision repair
03420-Nucleotide excision repair
03430-Mismatch repair
03440-Homologous recombination
03450-Non-homologous end-joining
03460-Fanconi anemia pathway
04010-MAPK signaling pathway
04011-MAPK signaling pathway - yeast
04012-ErbB signaling pathway
04013-MAPK signaling pathway - fly
04014-Ras signaling pathway
04015-Rap1 signaling pathway
04016-MAPK signaling pathway - plant
04020-Calcium signaling pathway
04022-cGMP-PKG signaling pathway
04024-cAMP signaling pathway
04060-Cytokine-cytokine receptor interaction
04061-Viral protein interaction with cytokine and cytokine receptor
04062-Chemokine signaling pathway
04064-NF-kappa B signaling pathway
04066-HIF-1 signaling pathway
04068-FoxO signaling pathway
04070-Phosphatidylinositol signaling system
04071-Sphingolipid signaling pathway
04072-Phospholipase D signaling pathway
04075-Plant hormone signal transduction
04080-Neuroactive ligand-receptor interaction
04110-Cell cycle
04111-Cell cycle - yeast
04112-Cell cycle - Caulobacter
04113-Meiosis - yeast
04114-Oocyte meiosis
04115-p53 signaling pathway
04120-Ubiquitin mediated proteolysis
04122-Sulfur relay system
04130-SNARE interactions in vesicular transport
04136-Autophagy - other
04137-Mitophagy - animal
04138-Autophagy - yeast
04139-Mitophagy - yeast
04140-Autophagy - animal
04141-Protein processing in endoplasmic reticulum
04142-Lysosome
04144-Endocytosis
04145-Phagosome
04146-Peroxisome
04150-mTOR signaling pathway
04151-PI3K-Akt signaling pathway
04152-AMPK signaling pathway
04210-Apoptosis
04211-Longevity regulating pathway
04212-Longevity regulating pathway - worm
04213-Longevity regulating pathway - multiple species
04214-Apoptosis - fly
04215-Apoptosis - multiple species
04216-Ferroptosis
04217-Necroptosis
04218-Cellular senescence
04260-Cardiac muscle contraction
04261-Adrenergic signaling in cardiomyocytes
04270-Vascular smooth muscle contraction
04310-Wnt signaling pathway
04320-Dorso-ventral axis formation
04330-Notch signaling pathway
04340-Hedgehog signaling pathway
04341-Hedgehog signaling pathway - fly
04350-TGF-beta signaling pathway
04360-Axon guidance
04361-Axon regeneration
04370-VEGF signaling pathway
04371-Apelin signaling pathway
04380-Osteoclast differentiation
04390-Hippo signaling pathway
04391-Hippo signaling pathway - fly
04392-Hippo signaling pathway - multiple species
04510-Focal adhesion
04512-ECM-receptor interaction
04514-Cell adhesion molecules
04520-Adherens junction
04530-Tight junction
04540-Gap junction
04550-Signaling pathways regulating pluripotency of stem cells
04610-Complement and coagulation cascades
04611-Platelet activation
04612-Antigen processing and presentation
04613-Neutrophil extracellular trap formation
04614-Renin-angiotensin system
04620-Toll-like receptor signaling pathway
04621-NOD-like receptor signaling pathway
04622-RIG-I-like receptor signaling pathway
04623-Cytosolic DNA-sensing pathway
04624-Toll and Imd signaling pathway
04625-C-type lectin receptor signaling pathway
04626-Plant-pathogen interaction
04630-JAK-STAT signaling pathway
04640-Hematopoietic cell lineage
04650-Natural killer cell mediated cytotoxicity
04657-IL-17 signaling pathway
04658-Th1 and Th2 cell differentiation
04659-Th17 cell differentiation
04660-T cell receptor signaling pathway
04662-B cell receptor signaling pathway
04664-Fc epsilon RI signaling pathway
04666-Fc gamma R-mediated phagocytosis
04668-TNF signaling pathway
04670-Leukocyte transendothelial migration
04672-Intestinal immune network for IgA production
04710-Circadian rhythm
04711-Circadian rhythm - fly
04712-Circadian rhythm - plant
04713-Circadian entrainment
04714-Thermogenesis
04720-Long-term potentiation
04721-Synaptic vesicle cycle
04722-Neurotrophin signaling pathway
04723-Retrograde endocannabinoid signaling
04724-Glutamatergic synapse
04725-Cholinergic synapse
04726-Serotonergic synapse
04727-GABAergic synapse
04728-Dopaminergic synapse
04730-Long-term depression
04740-Olfactory transduction
04742-Taste transduction
04744-Phototransduction
04745-Phototransduction - fly
04750-Inflammatory mediator regulation of TRP channels
04810-Regulation of actin cytoskeleton
04910-Insulin signaling pathway
04911-Insulin secretion
04912-GnRH signaling pathway
04913-Ovarian steroidogenesis
04914-Progesterone-mediated oocyte maturation
04915-Estrogen signaling pathway
04916-Melanogenesis
04917-Prolactin signaling pathway
04918-Thyroid hormone synthesis
04919-Thyroid hormone signaling pathway
04920-Adipocytokine signaling pathway
04921-Oxytocin signaling pathway
04922-Glucagon signaling pathway
04923-Regulation of lipolysis in adipocytes
04924-Renin secretion
04925-Aldosterone synthesis and secretion
04926-Relaxin signaling pathway
04927-Cortisol synthesis and secretion
04928-Parathyroid hormone synthesis, secretion and action
04929-GnRH secretion
04930-Type II diabetes mellitus
04931-Insulin resistance
04932-Non-alcoholic fatty liver disease
04933-AGE-RAGE signaling pathway in diabetic complications
04934-Cushing syndrome
04935-Growth hormone synthesis, secretion and action
04936-Alcoholic liver disease
04940-Type I diabetes mellitus
04950-Maturity onset diabetes of the young
04960-Aldosterone-regulated sodium reabsorption
04961-Endocrine and other factor-regulated calcium reabsorption
04962-Vasopressin-regulated water reabsorption
04964-Proximal tubule bicarbonate reclamation
04966-Collecting duct acid secretion
04970-Salivary secretion
04971-Gastric acid secretion
04972-Pancreatic secretion
04973-Carbohydrate digestion and absorption
04974-Protein digestion and absorption
04975-Fat digestion and absorption
04976-Bile secretion
04977-Vitamin digestion and absorption
04978-Mineral absorption
04979-Cholesterol metabolism
05010-Alzheimer disease
05012-Parkinson disease
05014-Amyotrophic lateral sclerosis
05016-Huntington disease
05017-Spinocerebellar ataxia
05020-Prion disease
05022-Pathways of neurodegeneration - multiple diseases
05030-Cocaine addiction
05031-Amphetamine addiction
05032-Morphine addiction
05033-Nicotine addiction
05034-Alcoholism
05100-Bacterial invasion of epithelial cells
05110-Vibrio cholerae infection
05111-Biofilm formation - Vibrio cholerae
05120-Epithelial cell signaling in Helicobacter pylori infection
05130-Pathogenic Escherichia coli infection
05131-Shigellosis
05132-Salmonella infection
05133-Pertussis
05134-Legionellosis
05135-Yersinia infection
05140-Leishmaniasis
05142-Chagas disease
05143-African trypanosomiasis
05144-Malaria
05145-Toxoplasmosis
05146-Amoebiasis
05150-Staphylococcus aureus infection
05152-Tuberculosis
05160-Hepatitis C
05161-Hepatitis B
05162-Measles
05163-Human cytomegalovirus infection
05164-Influenza A
05165-Human papillomavirus infection
05166-Human T-cell leukemia virus 1 infection
05167-Kaposi sarcoma-associated herpesvirus infection
05168-Herpes simplex virus 1 infection
05169-Epstein-Barr virus infection
05170-Human immunodeficiency virus 1 infection
05171-Coronavirus disease - COVID-19
05200-Pathways in cancer
05202-Transcriptional misregulation in cancer
05203-Viral carcinogenesis
05204-Chemical carcinogenesis - DNA adducts
05205-Proteoglycans in cancer
05206-MicroRNAs in cancer
05207-Chemical carcinogenesis - receptor activation
05208-Chemical carcinogenesis - reactive oxygen species
05210-Colorectal cancer
05211-Renal cell carcinoma
05212-Pancreatic cancer
05213-Endometrial cancer
05214-Glioma
05215-Prostate cancer
05216-Thyroid cancer
05217-Basal cell carcinoma
05218-Melanoma
05219-Bladder cancer
05220-Chronic myeloid leukemia
05221-Acute myeloid leukemia
05222-Small cell lung cancer
05223-Non-small cell lung cancer
05224-Breast cancer
05225-Hepatocellular carcinoma
05226-Gastric cancer
05230-Central carbon metabolism in cancer
05231-Choline metabolism in cancer
05235-PD-L1 expression and PD-1 checkpoint pathway in cancer
05310-Asthma
05320-Autoimmune thyroid disease
05321-Inflammatory bowel disease
05322-Systemic lupus erythematosus
05323-Rheumatoid arthritis
05330-Allograft rejection
05332-Graft-versus-host disease
05340-Primary immunodeficiency
05410-Hypertrophic cardiomyopathy
05412-Arrhythmogenic right ventricular cardiomyopathy
05414-Dilated cardiomyopathy
05415-Diabetic cardiomyopathy
05416-Viral myocarditis
05417-Lipid and atherosclerosis
05418-Fluid shear stress and atherosclerosis
Output Suffix:
Kegg Native:
Same Layer:
Discrete Gene:
Discrete Compound:
Multi State:
Match Data:
Compound Label Offset:
Key Alignment:
x
y
Signature Position:
bottom left
bottom right
top left
top right
none
Key
Position:
bottom left
bottom right
top left
top right
none
Node Sum:
sum
mean
median
max
max.abs
random
NA Color:
transparent
grey
Attribute
Gene
Compound
Limit:
Bins:
Low:
Mid:
High: